Two papers on the complete transcriptome

Lopez DA, Hamaji T, Kropat J, De Hoff P, Morselli M, Rubbi L, Fitz-Gibbon ST, Gallaher SD, Merchant SS, Umen JG, Pellegrini M. Dynamic changes in thetranscriptome and methylome of Chlamydomonas reinhardtii throughout its lifecycle. Plant Physiol. 2015 Oct 8. pii: pp.00861.2015. [Epub ahead of print]PubMed PMID: 26450704.

Zones JM, Blaby IK, Merchant SS, Umen JG. High-Resolution Profiling of a Synchronized Diurnal Transcriptome from Chlamydomonas reinhardtii Reveals Continuous Cell and Metabolic Differentiation. Plant Cell. 2015 Oct 2. pii:tpc.15.00498. [Epub ahead of print] PubMed PMID: 26432862.