| Linkage Group | Locus /Gene Name | Probe, Gene or Gene Product | References | Accession # |
| XI | PETC | chloroplast Rieske Fe-S precursor protein | deVitry (1994) | X76299 |
| XI | VFL2 | centrin / caltractin | Lee et al. (1991) | X57973 |
| XI | CNA19 | cDNA fragment | This study | AF503637 |
| XI | GP49 | random genomic fragment | This study | |
| XI | SD165 | genomic fragment | S. Dutcher, unpublished results | |
| XI | PSBW | core subunit of photosystem II | Bishop et al. (1999) | AF170026 |
| XI | PF28 | dynein heavy chain gamma | Wilkerson et al. (1994) | U15303 |
| XI | RPS14 | ribosomal protein S14 (CRY1 locus) | Nelson et al. (1994) | U06937 |
| XI | GP40 | random genomic fragment | This study | AF525923 |