| Linkage Group | Locus /Gene Name | Probe, Gene or Gene Product | References | Accession # |
| V | GP7 | random genomic fragment | This study | AF467707 |
| V | GP228 | genomic fragment; corresponds to EST1024061H08 | This study | BG859190 |
| V | MUT6 | DEAH-Box RNA helicase involved in gene silencing | Wu-Scharf et al. (2000) | AF305070 |
| V | ALD | plastid fructose-1,6-bisphosphate aldolase | Peltzer-Reith et al. (1995) | X85495 |
| V | DHC6 | dynein heavy chain 6 | Porter et al. (1996) | U61369 |
| V | ODA16 | genomic fragment | D. Mitchell, unpublished results | |
| V | CNC19 | cDNA corresponding to EST AV621283 | This study | AV621283 |
| V | PF26 (S6187) | pcf 6-187cDNA, upregulated after deflagellation; radial spoke protein 6 | Schloss et al. (1984); Ranum et al. (1988); Curry et al. (1992) | M87526 |