| Linkage Group | Locus /Gene Name | Probe, Gene or Gene Product | References | Accession # |
| VI | MT | mating type phenotypic marker | ||
| VI | TPX | thioredoxin peroxidase | Y. Lee, S.H. Miller, L. Keller, unpublished results | AF312025 |
| VI | HSP70B | chloroplast-localized heat shock protein | Drzymalla et al. (1996) | X96502 |
| VI | VFL6 | VFL6 gene | K. Iyadurai and C. Silflow, unpublished results | |
| VI | DHC3 | dynein heavy chain 3 | Porter et al. (1996) | U61366 |
| VI | CNA80 | cDNA corresponding to EST 1031002F08 | This study | BI816487 |
| VI | CNA46 | cDNA fragment | This study | |
| VI | S813 | G protein beta subunit-like protein | Schloss (1990) | X53574 |
| VI | VFL3 | VFL3 gene | K. Iyadurai and C. Silflow, unpublished results | |
| VI | CNC30 | cDNA corresponding to cabII-1 | This study; Imbault et al. (1988) | M24072 |
| VI | EST 925003F02 | EST | A. Grossman et al., unpublished results | BE441254 |
| VI | ICL | isocitrate lyase | Petridou et al. (1997) | U18765 |
| VI | CABI -1 | light harvesting complex protein I-20 | Hwang and Herrin (1993) | X65119 |
| VI | PBT201 | genomic fragment | B. Tailon and J. Jarvik, unpublished results | |
| VI | PF14 | radial spoke polypeptide 3 | Williams et al. (1989) | X14549 |
| VI | PP1 | axonemal type-1-phosphatase | Yang et al. (2000) | AF156101 |
| VI | CRY1 | DNA photolyase/bluelight photoreceptor | Small et al. (1995) | L07561 |
| VI | TUG | gamma-tubulin | Silflow et al. (1999) | U31545 |
| VI | CNA9 | cDNA corresponding to EST 1024003B10 | This study | BG843541 |
| VI | GAS3 | gene expressed during sexual differentiation | Von Gromoff and Beck (1993) | |
| VI | RPL41 | ribosomal protein L41 (ACT2 locus) | Stevens et al. (2001) | AF130727 |